ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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U2UMQ6_nD5 - ECOD Domain | ECOD

ECOD/Domains/U2UMQ6_nD5

U2UMQ6_nD5

UID: 004585560

AlphaFold

Range: 886-1070,1256-1305
AlphaFold: AF-U2UMQ6
UniProt: U2UMQ6 (all domains)
Gene: cas12a

Protein: CRISPR-associated endonuclease Cas12a (EC 3.1.21.1) (EC 4.6.1.22) (AsCpf1) (CRISPR-associated endonuclease Cpf1)

3D Structure

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Related Domains

Browse other domains in RuvC_1 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRuvC_1(2484.1.1.84)

Pfam Families

RuvC nuclease domain

ClanCL0219RNase_H

External Links

AlphaFold DB: U2UMQ6 UniProt: U2UMQ6

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 886-1070,1256-1305