ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q8PUP4_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q8PUP4_nD1

Q8PUP4_nD1

UID: 004589138

AlphaFold

Range: 1-195
AlphaFold: AF-Q8PUP4
UniProt: Q8PUP4 (all domains)
Gene: rlmE

Protein: Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.166) (23S rRNA Um2552 methyltransferase) (rRNA (uridine-2'-O-)-methyltransferase)

3D Structure

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Related Domains

Browse other domains in FtsJ →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyFtsJ(2003.1.5.15)

Pfam Families

FtsJ-like methyltransferase

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: Q8PUP4 UniProt: Q8PUP4

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-195