ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

A8AFL6_nD2 - ECOD Domain | ECOD

ECOD/Domains/A8AFL6_nD2

A8AFL6_nD2

UID: 004600930

AlphaFold

Range: 326-410
AlphaFold: AF-A8AFL6
UniProt: A8AFL6 (all domains)
Gene: rsmF

Protein: Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.178) (16S rRNA m5C1407 methyltransferase) (rRNA (cytosine-C(5)-)-methyltransferase RsmF)

3D Structure

Loading viewer...

Related Domains

Browse other domains in YebU_pre-PUA_dom →

Classification

AArchitecturea+b two layers(a.11)

XX-groupCystatin-like(243)

HH-groupPre-PUA domain(243.6)

TT-groupPre-PUA domain(243.6.1)

FFamilyYebU_pre-PUA_dom(243.6.1.6)

Pfam Families

PF21150YebU_pre-PUA_dom

Ribosomal RNA small subunit methyltransferase F, pre-PUA domain

External Links

AlphaFold DB: A8AFL6 UniProt: A8AFL6

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 326-410