ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q52DF3_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q52DF3_nD3

Q52DF3_nD3

UID: 004611957

AlphaFold

Range: 366-770,801-830
AlphaFold: AF-Q52DF3
UniProt: Q52DF3 (all domains)
Gene: SYF1

Protein: Pre-mRNA-splicing factor SYF1

3D Structure

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Related Domains

Browse other domains in TPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_PRP39_N →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyTPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_PRP39_N(109.4.1.1479)

Pfam Families

Tetratricopeptide repeat

ClanCL0020TPR

PF23220HAT_Syf1_M

Pre-mRNA-splicing factor SYF1 middle HAT repeat

ClanCL0020TPR

PF23231HAT_Syf1_CNRKL1_C

Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

ClanCL0020TPR

PF23240HAT_PRP39_N

PRP39 N-terminal HAT repeat

External Links

AlphaFold DB: Q52DF3 UniProt: Q52DF3

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 366-770,801-830

TPR