ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1cy1A2 - ECOD Domain | ECOD

ECOD/Domains/e1cy1A2

e1cy1A2

UID: 000046129

PDB

Range: A:156-213,A:472-591
PDB: 1CY1 chain A(all domains)
UniProt: P06612 (all domains)
Gene: topA

Molecule: DNA TOPOISOMERASE I

3D Structure

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Related Domains

Browse other domains in Topoisom_bac →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyTopoisom_bac(101.1.2.19)

Ligands

in contact, ≤ 4 Å

Thymidine monophosphateTMP
drugDrugBank DB01643

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

PF01131Topoisom_bac

DNA topoisomerase

External Links

ECOD PDB View: 1CY1 RCSB PDB: 1CY1 PDBe: 1CY1 UniProt: P06612

Downloads

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Drug annotations from DrugDomain.