ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q5NEF9_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5NEF9_nD1

Q5NEF9_nD1

UID: 004616010

AlphaFold

Range: 6-200
AlphaFold: AF-Q5NEF9
UniProt: Q5NEF9 (all domains)
Gene: mnmA

Protein: tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13)

3D Structure

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Related Domains

Browse other domains in NAD_synthase, tRNA_Me_trans →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilyNAD_synthase, tRNA_Me_trans(2005.1.1.47)

Pfam Families

PF02540NAD_synthase

NAD synthase

ClanCL0039HUP

PF03054tRNA_Me_trans

tRNA methyl transferase HUP domain

ClanCL0039HUP

External Links

AlphaFold DB: Q5NEF9 UniProt: Q5NEF9

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-200