ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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B2SQQ1_nD2 - ECOD Domain | ECOD

ECOD/Domains/B2SQQ1_nD2

B2SQQ1_nD2

UID: 004627849

AlphaFold

Range: 6-155,481-605
AlphaFold: AF-B2SQQ1
UniProt: B2SQQ1 (all domains)
Gene: rpoB

Protein: DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (EC 2.7.7.6) (RNA polymerase subunit beta) (Transcriptase subunit beta)

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupN-terminal domain in beta subunit of DNA dependent RNA-polymerase(4010)

HH-groupN-terminal domain in beta subunit of DNA dependent RNA-polymerase(4010.1)

TT-groupN-terminal domain in beta subunit of DNA dependent RNA-polymerase(4010.1.1)

FFamilyRNA_pol_Rpb2_1,RNA_pol_Rpb2_3(4010.1.1.2)

Pfam Families

PF04563RNA_pol_Rpb2_1

RNA polymerase beta subunit

PF04565RNA_pol_Rpb2_3

RNA polymerase Rpb2, domain 3

External Links

AlphaFold DB: B2SQQ1 UniProt: B2SQQ1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-155,481-605