ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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B6YWC1_nD1 - ECOD Domain | ECOD

ECOD/Domains/B6YWC1_nD1

B6YWC1_nD1

UID: 004670754

AlphaFold

Range: 1-205
AlphaFold: AF-B6YWC1
UniProt: B6YWC1 (all domains)
Gene: csm4

Protein: CRISPR system Cms protein Csm4 (CRISPR type III A-associated RAMP protein Csm4)

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51)

TT-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51.1)

FFamilyRAMPs(304.51.1.2)

Pfam Families

RAMP superfamily

ClanCL0362RAMPS-Cas5-like

External Links

AlphaFold DB: B6YWC1 UniProt: B6YWC1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-205