ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A9Y1BJ32_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A0A9Y1BJ32_F1_nD1

A0A9Y1BJ32_F1_nD1

UID: 004943359

AlphaFold

Range: 11-245
AlphaFold: AF-A0A9Y1BJ32
UniProt: A0A9Y1BJ32 (all domains)
Gene: truB

Protein: Probable tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase)

3D Structure

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Related Domains

Browse other domains in TruB_C_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyTruB_C_2(304.102.1.13)

Pfam Families

PF16198TruB_C_2

tRNA pseudouridylate synthase B C-terminal domain

ClanCL0649PseudoU_synth

External Links

AlphaFold DB: A0A9Y1BJ32 UniProt: A0A9Y1BJ32

Representative

This domain is classified based on similarity to:

EPP00014052_nD1

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 11-245