ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

A0AAF0D1M1_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A0AAF0D1M1_F1_nD1

A0AAF0D1M1_F1_nD1

UID: 004947306

AlphaFold

Range: 1-100
AlphaFold: AF-A0AAF0D1M1
UniProt: A0AAF0D1M1 (all domains)
Gene: lig

Protein: DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP])

3D Structure

Loading viewer...

Related Domains

Browse other domains in DNA_ligase_A_N →

Classification

AArchitecturealpha bundles(a.7)

XX-groupATP-dependent DNA ligase DNA-binding domain(4095)

HH-groupATP-dependent DNA ligase DNA-binding domain(4095.1)

TT-groupATP-dependent DNA ligase DNA-binding domain(4095.1.1)

FFamilyDNA_ligase_A_N(4095.1.1.1)

Pfam Families

PF04675DNA_ligase_A_N

DNA ligase N terminus

External Links

AlphaFold DB: A0AAF0D1M1 UniProt: A0AAF0D1M1

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-100