ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A5UMP8_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/A5UMP8_F1_nD3

A5UMP8_F1_nD3

UID: 004953996

AlphaFold

Range: 146-180,301-570
AlphaFold: AF-A5UMP8
UniProt: A5UMP8 (all domains)
Gene: polB

Protein: DNA polymerase II small subunit (Pol II) (EC 2.7.7.7) (Exodeoxyribonuclease small subunit) (EC 3.1.11.1)

3D Structure

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Related Domains

Browse other domains in DNA_pol_E_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupCarbon-nitrogen hydrolase-like(246)

HH-groupMetallo-dependent phosphatases(246.2)

TT-groupMetallo-dependent phosphatases(246.2.1)

FFamilyDNA_pol_E_B(246.2.1.7)

Pfam Families

PF04042DNA_pol_E_B

DNA polymerase alpha/epsilon subunit B

ClanCL0163Calcineurin

External Links

AlphaFold DB: A5UMP8 UniProt: A5UMP8

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 146-180,301-570