ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q4J7D4_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q4J7D4_F1_nD2

Q4J7D4_F1_nD2

UID: 005009795

AlphaFold

Range: 131-270
AlphaFold: AF-Q4J7D4
UniProt: Q4J7D4 (all domains)
Gene: Saci_2008

Protein: Conserved protein

3D Structure

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Related Domains

Browse other domains in CRISPR_Cas6 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51)

TT-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51.1)

FFamilyCRISPR_Cas6(304.51.1.7)

Pfam Families

PF10040CRISPR_Cas6

CRISPR-associated endoribonuclease Cas6

ClanCL0362RAMPS-Cas5-like

External Links

AlphaFold DB: Q4J7D4 UniProt: Q4J7D4

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 131-270