ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q4JB16_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q4JB16_F1_nD1

Q4JB16_F1_nD1

UID: 005011507

AlphaFold

Range: 1-155,161-235
AlphaFold: AF-Q4JB16
UniProt: Q4JB16 (all domains)
Gene: trmJ

Protein: tRNA (cytidine-2'-O-)-methyltransferase TrmJ (EC 2.1.1.-) (tRNA (cytidine(32)-2'-O)-methyltransferase) (tRNA Cm32 methyltransferase)

3D Structure

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Related Domains

Browse other domains in SpoU_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySpoU_methylase(2488.1.1.1)

Pfam Families

PF00588SpoU_methylase

SpoU rRNA Methylase family

ClanCL0098SPOUT

External Links

AlphaFold DB: Q4JB16 UniProt: Q4JB16

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1-155,161-235