ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Grishin Lab
UT Southwestern
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Q5JD00_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q5JD00_F1_nD2

Q5JD00_F1_nD2

UID: 005012235

AlphaFold

Range: 116-280
AlphaFold: AF-Q5JD00
UniProt: Q5JD00 (all domains)
Gene: TK0381

Protein: SSV1 integrase homolog, C-fragment

3D Structure

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Related Domains

Browse other domains in Phage_integr_3 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupDNA breaking-rejoining enzymes(101.1.8)

FFamilyPhage_integr_3(101.1.8.8)

Pfam Families

PF16795Phage_integr_3

Archaeal phage integrase

ClanCL0382DNA-mend

External Links

AlphaFold DB: Q5JD00 UniProt: Q5JD00

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 116-280