ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5JE33_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q5JE33_F1_nD3

Q5JE33_F1_nD3

UID: 005012722

AlphaFold

Range: 321-350,416-500
AlphaFold: AF-Q5JE33
UniProt: Q5JE33 (all domains)
Gene: rpo1N

Protein: DNA-directed RNA polymerase subunit Rpo1N (EC 2.7.7.6) (DNA-directed RNA polymerase subunit A')

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyRNA_pol_Rpb1_2(1.1.2.2)

Pfam Families

PF00623RNA_pol_Rpb1_2

RNA polymerase Rpb1, domain 2

External Links

AlphaFold DB: Q5JE33 UniProt: Q5JE33

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 321-350,416-500