ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q5JGM2_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5JGM2_F1_nD1

Q5JGM2_F1_nD1

UID: 005013849

AlphaFold

Range: 6-140
AlphaFold: AF-Q5JGM2
UniProt: Q5JGM2 (all domains)
Gene: vapC

Protein: Ribonuclease VapC (RNase VapC) (EC 3.1.-.-) (Putative toxin VapC)

3D Structure

Loading viewer...

Related Domains

Browse other domains in PIN →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupPIN domain-like(2006.1.4)

FFamilyPIN(2006.1.4.2)

Pfam Families

PIN domain

ClanCL0280PIN

External Links

AlphaFold DB: Q5JGM2 UniProt: Q5JGM2

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-140