ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5udoB1 - ECOD Domain | ECOD

ECOD/Domains/e5udoB1

e5udoB1

UID: 005092678

PDB

Range: B:131-328
PDB: 5UDO chain B(all domains)
UniProt: Q928V6 (all domains)
Gene: int

Molecule: Integrase [Bacteriophage A118]

3D Structure

Loading viewer...

Related Domains

Browse other domains in Zn_ribbon_recom →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupZinc-nucleated domain of serine integrase(375.1.9)

FFamilyZn_ribbon_recom(375.1.9.1)

Pfam Families

PF13408Zn_ribbon_recom

Recombinase zinc beta ribbon domain

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 5UDO RCSB PDB: 5UDO PDBe: 5UDO UniProt: Q928V6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure