ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1kbyM1 - ECOD Domain | ECOD

ECOD/Domains/e1kbyM1

e1kbyM1

UID: 000058041

PDB

Range: M:1-302
PDB: 1KBY chain M(all domains)
UniProt: P0C0Y9 (all domains)
Gene: pufM

Molecule: PHOTOSYNTHETIC REACTION CENTER PROTEIN M CHAIN

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
Tetrastearoyl cardiolipinCDL
drugDrugBank DB03429

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 1KBY RCSB PDB: 1KBY PDBe: 1KBY UniProt: P0C0Y9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Ubidecarenone

drugDrugBank DB09270

Bacteriopheophytin aBPH

FE (III) IONFE

metal

SpheroideneSPO

Chloride ionCL

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.