ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2go3B2 - ECOD Domain | ECOD

ECOD/Domains/e2go3B2

e2go3B2

UID: 000071500

PDB

Range: B:134-279
PDB: 2GO3 chain B(all domains)
UniProt: O67648 (all domains)
Gene: lpxC

Molecule: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

3D Structure

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Related Domains

Browse other domains in LpxC →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyLpxC(212.1.1.15)

Ligands

in contact, ≤ 4 Å

Myristic acidMYR
drugDrugBank DB08231
Palmitic AcidPLM
drugDrugBank DB03796
Chloride ion

Pfam Families

UDP-3-O-acyl N-acetylglycosamine deacetylase

ClanCL0329S5

External Links

ECOD PDB View: 2GO3 RCSB PDB: 2GO3 PDBe: 2GO3 UniProt: O67648

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Zinc ionZN

metal

+ 2 additives (Glycerin, Imidazole)

GlycerinGOL
DrugBank DB09462
ImidazoleIMD
DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.