ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1mskA1 - ECOD Domain | ECOD

ECOD/Domains/e1mskA1

e1mskA1

UID: 000007459

RepresentativePDB

Range: A:901-1227
PDB: 1MSK chain A(all domains)
UniProt: P13009 (all domains)
Gene: metH

Molecule: COBALAMIN-DEPENDENT METHIONINE SYNTHASE

3D Structure

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Related Domains

Browse other domains in Met_synt_B12 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupMethionine synthase activation domain-like(258)

HH-groupMethionine synthase activation domain-like(258.1)

TT-groupMethionine synthase activation domain-like(258.1.1)

FFamilyMet_synt_B12(258.1.1.1)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer.

Pfam Families

PF02965Met_synt_B12

Vitamin B12 dependent methionine synthase, activation domain

External Links

ECOD PDB View: 1MSK RCSB PDB: 1MSK PDBe: 1MSK UniProt: P13009

Downloads

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Drug annotations from DrugDomain.