ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1avvA1 - ECOD Domain | ECOD

ECOD/Domains/e1avvA1

e1avvA1

UID: 000077933

PDB

Range: A:74-147,A:179-203
PDB: 1AVV chain A(all domains)
UniProt: P03406 (all domains)
Gene: nef

Molecule: Protein Nef (3'ORF) (Negative factor) (F-protein) [Cleaved into: C-terminal core protein]

3D Structure

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Related Domains

Browse other domains in F-protein →

Classification

AArchitecturea+b three layers(a.12)

XX-groupRegulatory factor Nef(836)

HH-groupRegulatory factor Nef(836.1)

TT-groupRegulatory factor Nef(836.1.1)

FFamilyF-protein(836.1.1.1)

Pfam Families

PF00469F-protein

Negative factor, (F-Protein) or Nef

External Links

ECOD PDB View: 1AVV RCSB PDB: 1AVV PDBe: 1AVV UniProt: P03406

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