ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vhmB1 - ECOD Domain | ECOD

ECOD/Domains/e1vhmB1

e1vhmB1

UID: 000078226

PDB

Range: B:20-178
PDB: 1VHM chain B(all domains)
UniProt: P76270 (all domains)
Gene: msrC

Molecule: Protein yebR

3D Structure

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Related Domains

Browse other domains in GAF_2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupsensor domains(223.1)

TT-groupsensor domains(223.1.1)

FFamilyGAF_2(223.1.1.23)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

GAF domain

ClanCL0161GAF

External Links

ECOD PDB View: 1VHM RCSB PDB: 1VHM PDBe: 1VHM UniProt: P76270

Downloads

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