ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1jmoA1 - ECOD Domain | ECOD

ECOD/Domains/e1jmoA1

e1jmoA1

UID: 000086478

PDB

Range: A:61-480
PDB: 1JMO chain A(all domains)
UniProt: P05546 (all domains)
Gene: SERPIND1

Molecule: HEPARIN COFACTOR II

3D Structure

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Related Domains

Browse other domains in Serpin →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupSerpins(4059)

HH-groupSerpins(4059.1)

TT-groupSerpins(4059.1.1)

FFamilySerpin(4059.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Pfam Families

Serpin (serine protease inhibitor)

External Links

ECOD PDB View: 1JMO RCSB PDB: 1JMO PDBe: 1JMO UniProt: P05546

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.