ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1knwA2 - ECOD Domain | ECOD

ECOD/Domains/e1knwA2

e1knwA2

UID: 000008904

RepresentativePDB

Range: A:32-278
PDB: 1KNW chain A(all domains)
UniProt: P00861 (all domains)
Gene: lysA

Molecule: Diaminopimelate decarboxylase

3D Structure

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Related Domains

Browse other domains in Orn_Arg_deC_N →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyOrn_Arg_deC_N(2002.1.1.101)

Ligands

in contact, ≤ 4 Å

Pyridoxal phosphatePLP
drugDrugBank DB00114
Lithium ionLI
metal

+ 2 additives (2-(N-morpholino)ethanesulfonic acid, Sulfate ion)

2-(N-morpholino)ethanesulfonic acidMES

Pfam Families

PF02784Orn_Arg_deC_N

Pyridoxal-dependent decarboxylase, pyridoxal binding domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 1KNW RCSB PDB: 1KNW PDBe: 1KNW UniProt: P00861

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03814

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.