ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1pj5A4 - ECOD Domain | ECOD

ECOD/Domains/e1pj5A4

e1pj5A4

UID: 000009232

RepresentativePDB

Range: A:4-219,A:339-427
PDB: 1PJ5 chain A(all domains)
UniProt: Q9AGP8 (all domains)
Gene: dmg

Molecule: N,N-dimethylglycine oxidase

3D Structure

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Related Domains

Browse other domains in DAO,FAO_M →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyDAO,FAO_M(2003.1.2.14)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
Sodium ionNA
metal

+ 1 additive (Acetate)

AcetateACT

Pfam Families

FAD dependent oxidoreductase

ClanCL0063NADP_Rossmann

FAD dependent oxidoreductase central domain

External Links

ECOD PDB View: 1PJ5 RCSB PDB: 1PJ5 PDBe: 1PJ5 UniProt: Q9AGP8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.