ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1pb0B1 - ECOD Domain | ECOD

ECOD/Domains/e1pb0B1

e1pb0B1

UID: 000092936

PDB

Range: B:2-245
PDB: 1PB0 chain B(all domains)
UniProt: P75914 (all domains)
Gene: ycdX

Molecule: Hypothetical protein ycdX

3D Structure

Loading viewer...

Related Domains

Browse other domains in PHP →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyPHP(2002.1.1.102)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (Formic acid, Sulfate ion)

Formic acidFMT
DrugBank DB01942
Sulfate ion

Pfam Families

PHP domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 1PB0 RCSB PDB: 1PB0 PDBe: 1PB0 UniProt: P75914

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.