ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1yf3A1 - ECOD Domain | ECOD

ECOD/Domains/e1yf3A1

e1yf3A1

UID: 000009374

RepresentativePDB

Range: A:1-259
PDB: 1YF3 chain A(all domains)
UniProt: P04392 (all domains)
Gene: DAM

Molecule: DNA adenine methylase

3D Structure

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Related Domains

Browse other domains in MethyltransfD12 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransfD12(2003.1.5.20)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF02086MethyltransfD12

D12 class N6 adenine-specific DNA methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1YF3 RCSB PDB: 1YF3 PDBe: 1YF3 UniProt: P04392

Downloads

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Drug annotations from DrugDomain.