ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1ydyB1 - ECOD Domain | ECOD

ECOD/Domains/e1ydyB1

e1ydyB1

UID: 000094000

PDB

Range: B:29-356
PDB: 1YDY chain B(all domains)
UniProt: P09394 (all domains)
Gene: glpQ

Molecule: Glycerophosphodiester phosphodiesterase, periplasmic (Glycerophosphoryl diester phosphodiesterase, periplasmic) (EC 3.1.4.46)

3D Structure

Loading viewer...

Related Domains

Browse other domains in GDPD →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGDPD(2002.1.1.106)

Pfam Families

Glycerophosphoryl diester phosphodiesterase family

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 1YDY RCSB PDB: 1YDY PDBe: 1YDY UniProt: P09394

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure