ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ikrB1 - ECOD Domain | ECOD

ECOD/Domains/e3ikrB1

e3ikrB1

UID: 000954058

PDB

Range: B:209-329
PDB: 3IKR chain B(all domains)
UniProt: P35247 (all domains)
Gene: SFTPD

Molecule: Pulmonary surfactant-associated protein D

3D Structure

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Related Domains

Browse other domains in Lectin_C,Surfac_D-trimer →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupC-type lectin-like(209)

HH-groupC-type lectin-like(209.1)

TT-groupC-type lectin-like(209.1.1)

FFamilyLectin_C,Surfac_D-trimer(209.1.1.3)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
alpha-D-mannopyranoseMAN

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00059Lectin_C

Lectin C-type domain

ClanCL0056C_Lectin

PF09006Surfac_D-trimer

Lung surfactant protein D coiled-coil trimerisation

External Links

ECOD PDB View: 3IKR RCSB PDB: 3IKR PDBe: 3IKR UniProt: P35247

Downloads

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