ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4a1iE1 - ECOD Domain | ECOD

ECOD/Domains/e4a1iE1

e4a1iE1

UID: 000975132

PDB

Range: E:49-164
PDB: 4A1I chain E(all domains)
UniProt: O34816 (all domains)
Gene: ykuD

Molecule: PUTATIVE L, D-TRANSPEPTIDASE YKUD

3D Structure

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Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Ligands

in contact, ≤ 4 Å

Cadmium ionCD
metal
Chloride ionCL

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

ECOD PDB View: 4A1I RCSB PDB: 4A1I PDBe: 4A1I UniProt: O34816

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.