ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4it0B1 - ECOD Domain | ECOD

ECOD/Domains/e4it0B1

e4it0B1

UID: 000977302

PDB

Range: B:1-480
PDB: 4IT0 chain B(all domains)
UniProt: O59245 (all domains)
Gene: rtcB

Molecule: tRNA-splicing ligase RtcB

3D Structure

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Related Domains

Browse other domains in RtcB →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupHypothetical protein PH1602(304.106)

TT-groupHypothetical protein PH1602(304.106.1)

FFamilyRtcB(304.106.1.1)

Ligands

in contact, ≤ 4 Å

MANGANESE (II) IONMN
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

tRNA-splicing ligase RtcB

External Links

ECOD PDB View: 4IT0 RCSB PDB: 4IT0 PDBe: 4IT0 UniProt: O59245

Downloads

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