ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1r6tA2 - ECOD Domain | ECOD

ECOD/Domains/e1r6tA2

e1r6tA2

UID: 000009808

RepresentativePDB

Range: A:82-467
PDB: 1R6T chain A(all domains)
UniProt: P23381 (all domains)
Gene: WARS1

Molecule: Tryptophanyl-tRNA synthetase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1b →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1b(2005.1.1.2)

Ligands

in contact, ≤ 4 Å

Tryptophanyl-5'ampTYM
drugDrugBank DB01831

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF00579tRNA-synt_1b

tRNA synthetases class I (W and Y)

ClanCL0039HUP

External Links

ECOD PDB View: 1R6T RCSB PDB: 1R6T PDBe: 1R6T UniProt: P23381

Downloads

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Drug annotations from DrugDomain.