ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4edkA3 - ECOD Domain | ECOD

ECOD/Domains/e4edkA3

e4edkA3

UID: 000981999

PDB

Range: A:240-361
PDB: 4EDK chain A(all domains)
UniProt: O05338 (all domains)
Gene: dnaG

Molecule: DNA primase

3D Structure

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Related Domains

Browse other domains in Toprim_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupToprim domain(2006.1.3)

FFamilyToprim_2(2006.1.3.6)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
BenzamidineBEN
MANGANESE (II) IONMN

Pfam Families

PF13155Toprim_2

Toprim-like

ClanCL0413Toprim-like

External Links

ECOD PDB View: 4EDK RCSB PDB: 4EDK PDBe: 4EDK UniProt: O05338

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.