ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2tmdB3 - ECOD Domain | ECOD

ECOD/Domains/e2tmdB3

e2tmdB3

UID: 000099127

PDB

Range: B:341-489,B:646-729
PDB: 2TMD chain B(all domains)
UniProt: P16099 (all domains)
Gene: tmd

Molecule: TRIMETHYLAMINE DEHYDROGENASE

3D Structure

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Related Domains

Browse other domains in Pyr_redox_2, NAD_binding_8 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNucleotide-binding domain(2003.1.3)

FFamilyPyr_redox_2, NAD_binding_8(2003.1.3.15)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Flavin mononucleotideFMN
drugDrugBank DB03247

Pfam Families

PF07992Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

ClanCL0063NADP_Rossmann

PF13450NAD_binding_8

NAD(P)-binding Rossmann-like domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 2TMD RCSB PDB: 2TMD PDBe: 2TMD UniProt: P16099

Downloads

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Iron/sulfur cluster

Shown in the structure viewer. Drug annotations from DrugDomain.