ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4b17A2 - ECOD Domain | ECOD

ECOD/Domains/e4b17A2

e4b17A2

UID: 000991579

PDB

Range: A:1-73
PDB: 4B17 chain A(all domains)
UniProt: P0ADR6 (all domains)
Gene: rlmM

Molecule: RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE M

3D Structure

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Related Domains

Browse other domains in RlmM_FDX →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFerredoxin-like domain in ThiI(304.120)

TT-groupFerredoxin-like domain in ThiI(304.120.1)

FFamilyRlmM_FDX(304.120.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Glycerin, Sulfate ion, 1,2-ETHANEDIOL)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546within 5 Å only
1,2-ETHANEDIOL

Pfam Families

PF18125RlmM_FDX

RlmM ferredoxin-like domain

External Links

ECOD PDB View: 4B17 RCSB PDB: 4B17 PDBe: 4B17 UniProt: P0ADR6

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.