PDB 1SMY
X-RAY DIFFRACTION2.70 Å0 chains50 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
2 domainsChain Bview chain
2 domainsChain Cview chain
7 domainsChain Dview chain
10 domainsChain Eview chain
1 domainChain Fview chain
3 domainsChain Kview chain
2 domainsChain Lview chain
2 domainsChain Mview chain
7 domainsChain Nview chain
10 domainsChain Oview chain
1 domainChain Pview chain
3 domainsAll Domains (50)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e1smyA1 | A:1-49,A:173-227 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 2 | A | e1smyA2 | A:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | B | e1smyB1 | B:1-49,B:173-227 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 4 | B | e1smyB2 | B:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 5 | C | e1smyC4 | C:1-142,C:332-457 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 6 | C | e1smyC5 | C:143-331 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 7 | C | e1smyC7 | C:1000-1119 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 8 | C | e1smyC2 | C:458-591 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 9 | C | e1smyC6 | C:592-662 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 10 | C | e1smyC8 | C:663-700,C:834-999 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 11 | C | e1smyC9 | C:701-833 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 12 | D | e1smyD1 | D:395-448 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 13 | D | e1smyD2 | D:611-653,D:697-777 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 14 | D | e1smyD3 | D:949-1109 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 15 | D | e1smyD4 | D:1110-1200 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 16 | D | e1smyD5 | D:166-217,D:364-394 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 17 | D | e1smyD6 | D:1270-1330 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 18 | D | e1smyD7 | D:654-696 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 19 | D | e1smyD8 | D:778-948 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 20 | D | e1smyD9 | D:2-165,D:449-610 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 21 | D | e1smyD10 | D:1201-1269,D:1331-1505 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 22 | E | e1smyE1 | E:2-96 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 23 | F | e1smyF1 | F:258-317 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 24 | F | e1smyF2 | F:319-423 | Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 25 | F | e1smyF3 | F:78-257 | Sigma70_r1_2,Sigma70_r2 | 142 → 142.1 → 142.1.1 |
| 26 | K | e1smyK1 | K:1-49,K:173-227 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 27 | K | e1smyK2 | K:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 28 | L | e1smyL1 | L:1-49,L:173-227 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 29 | L | e1smyL2 | L:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 30 | M | e1smyM4 | M:1-141,M:331-456 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 31 | M | e1smyM5 | M:142-330 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 32 | M | e1smyM7 | M:999-1118 | 4043.1.1.0 | 4043 → 4043.1 → 4043.1.1 |
| 33 | M | e1smyM6 | M:458-591 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 34 | M | e1smyM2 | M:592-662 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 35 | M | e1smyM8 | M:699-832 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 36 | M | e1smyM9 | M:664-700,M:827-999 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 37 | N | e1smyN1 | N:778-948 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 38 | N | e1smyN2 | N:654-696 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 39 | N | e1smyN3 | N:1201-1269,N:1331-1505 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 40 | N | e1smyN4 | N:611-653,N:697-777 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 41 | N | e1smyN5 | N:1270-1330 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 42 | N | e1smyN6 | N:395-448 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 43 | N | e1smyN7 | N:1110-1200 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 44 | N | e1smyN8 | N:166-217,N:364-394 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 45 | N | e1smyN9 | N:2-165,N:449-610 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 46 | N | e1smyN10 | N:949-1109 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 47 | O | e1smyO1 | O:2-96 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 48 | P | e1smyP1 | P:258-317 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 49 | P | e1smyP2 | P:319-423 | Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 50 | P | e1smyP3 | P:78-257 | Sigma70_r1_2,Sigma70_r2 | 142 → 142.1 → 142.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors