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PDB 1VY5

X-RAY DIFFRACTION2.55 Å0 chains110 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (110)

#ChainDomain IDRangeFamilyClassification
1ABe1vy5AB1AB:7-127,AB:157-237Ribosomal_S22007 → 2007.6 → 2007.6.1
2ACe1vy5AC1AC:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
3ACe1vy5AC2AC:2-106KH_2327 → 327.11 → 327.11.1
4ADe1vy5AD1AD:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
5AEe1vy5AE1AE:73-152Ribosomal_S5_C212 → 212.1 → 212.1.1
6AEe1vy5AE2AE:5-72Ribosomal_S5330 → 330.1 → 330.1.1
7AFe1vy5AF1AF:1-100Ribosomal_S6304 → 304.12 → 304.12.1
8AGe1vy5AG1AG:2-156Ribosomal_S7167 → 167.1 → 167.1.1
9AHe1vy5AH1AH:2-66Ribosomal_S8320 → 320.2 → 320.2.1
10AHe1vy5AH2AH:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
11AIe1vy5AI1AI:2-128Ribosomal_S9212 → 212.1 → 212.1.1
12AJe1vy5AJ1AJ:4-100Ribosomal_S10304 → 304.44 → 304.44.1
13AKe1vy5AK1AK:13-126Ribosomal_S112484 → 2484.1 → 2484.1.1
14ALe1vy5AL1AL:5-126Ribosom_S12_S232 → 2.1 → 2.1.1
15AMe1vy5AM1AM:2-124Ribosomal_S13102 → 102.2 → 102.2.1
16ANe1vy5AN1AN:2-61Ribosomal_S14377 → 377.1 → 377.1.1
17AOe1vy5AO1AO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
18APe1vy5AP1AP:1-82Ribosomal_S16837 → 837.1 → 837.1.1
19AQe1vy5AQ1AQ:2-78Ribosomal_S172 → 2.1 → 2.1.1
20ARe1vy5AR1AR:20-87Ribosomal_S18101 → 101.1 → 101.1.1
21ASe1vy5AS1AS:2-84Ribosomal_S19838 → 838.1 → 838.1.1
22ATe1vy5AT1AT:8-103Ribosomal_S20p604 → 604.9 → 604.9.1
23B0e1vy5B01B0:2-84Ribosomal_L27325 → 325.1 → 325.1.8
24B1e1vy5B11B1:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
25B2e1vy5B21B2:1-70Ribosomal_L29192 → 192.4 → 192.4.1
26B3e1vy5B31B3:2-60Ribosomal_L30887 → 887.1 → 887.1.1
27B4e1vy5B41B4:1-69Ribosomal_L314987 → 4987.1 → 4987.1.1
28B5e1vy5B51B5:2-60Ribosomal_L32p375 → 375.1 → 375.1.1
29B6e1vy5B61B6:2-54Ribosomal_L33375 → 375.1 → 375.1.1
30B7e1vy5B71B7:1-48Ribosomal_L343074 → 3074.1 → 3074.1.1
31B8e1vy5B81B8:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
32B9e1vy5B91B9:1-37Ribosomal_L36919 → 919.1 → 919.1.1
33BDe1vy5BD1BD:127-276Ribosomal_L2_C4 → 4.1 → 4.1.1
34BDe1vy5BD2BD:2-126Ribosomal_L22 → 2.1 → 2.1.1
35BEe1vy5BE1BE:1-204Ribosomal_L31 → 1.1 → 1.1.7
36BFe1vy5BF1BF:6-208Ribosomal_L47559 → 7559.1 → 7559.1.1
37BGe1vy5BG1BG:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
38BHe1vy5BH1BH:83-175Ribosomal_L6318 → 318.1 → 318.1.1
39BHe1vy5BH2BH:2-82Ribosomal_L6318 → 318.1 → 318.1.1
40BIe1vy5BI1BI:1-53Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
41BIe1vy5BI2BI:54-146Ribosomal_L9_C523 → 523.1 → 523.1.1
42BNe1vy5BN1BN:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
43BOe1vy5BO1BO:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
44BPe1vy5BP1BP:1-149Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
45BQe1vy5BQ1BQ:1-141Ribosomal_L16325 → 325.1 → 325.1.5
46BRe1vy5BR1BR:1-118Ribosomal_L17218 → 218.3 → 218.3.1
47BSe1vy5BS1BS:3-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
48BTe1vy5BT1BT:1-131Ribosomal_L194 → 4.1 → 4.1.1
49BUe1vy5BU1BU:2-117Ribosomal_L20143 → 143.2 → 143.2.1
50BVe1vy5BV1BV:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
51BWe1vy5BW1BW:1-112Ribosomal_L22218 → 218.2 → 218.2.1
52BXe1vy5BX1BX:1-95Ribosomal_L23304 → 304.109 → 304.109.1
53BYe1vy5BY1BY:1-107KOW,ribosomal_L244 → 4.1 → 4.1.1
54BZe1vy5BZ1BZ:93-171Ribosomal_TL5_C240 → 240.1 → 240.1.1
55BZe1vy5BZ2BZ:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
56CBe1vy5CB1CB:7-127,CB:157-237Ribosomal_S22007 → 2007.6 → 2007.6.1
57CCe1vy5CC1CC:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
58CCe1vy5CC2CC:2-106KH_2327 → 327.11 → 327.11.1
59CDe1vy5CD1CD:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
60CEe1vy5CE1CE:73-152Ribosomal_S5_C212 → 212.1 → 212.1.1
61CEe1vy5CE2CE:5-72Ribosomal_S5330 → 330.1 → 330.1.1
62CFe1vy5CF1CF:1-100Ribosomal_S6304 → 304.12 → 304.12.1
63CGe1vy5CG1CG:2-156Ribosomal_S7167 → 167.1 → 167.1.1
64CHe1vy5CH1CH:2-66Ribosomal_S8320 → 320.2 → 320.2.1
65CHe1vy5CH2CH:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
66CIe1vy5CI1CI:2-128Ribosomal_S9212 → 212.1 → 212.1.1
67CJe1vy5CJ1CJ:5-100Ribosomal_S10304 → 304.44 → 304.44.1
68CKe1vy5CK1CK:13-126Ribosomal_S112484 → 2484.1 → 2484.1.1
69CLe1vy5CL1CL:5-126Ribosom_S12_S232 → 2.1 → 2.1.1
70CMe1vy5CM1CM:3-124Ribosomal_S13102 → 102.2 → 102.2.1
71CNe1vy5CN1CN:2-61Ribosomal_S14377 → 377.1 → 377.1.1
72COe1vy5CO1CO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
73CPe1vy5CP1CP:1-82Ribosomal_S16837 → 837.1 → 837.1.1
74CQe1vy5CQ1CQ:2-78Ribosomal_S172 → 2.1 → 2.1.1
75CRe1vy5CR1CR:20-87Ribosomal_S18101 → 101.1 → 101.1.1
76CSe1vy5CS1CS:2-84Ribosomal_S19838 → 838.1 → 838.1.1
77CTe1vy5CT1CT:8-103Ribosomal_S20p604 → 604.9 → 604.9.1
78D0e1vy5D01D0:2-84Ribosomal_L27325 → 325.1 → 325.1.8
79D1e1vy5D11D1:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
80D2e1vy5D21D2:1-70Ribosomal_L29192 → 192.4 → 192.4.1
81D3e1vy5D31D3:2-60Ribosomal_L30887 → 887.1 → 887.1.1
82D4e1vy5D41D4:1-69Ribosomal_L314987 → 4987.1 → 4987.1.1
83D5e1vy5D51D5:2-60Ribosomal_L32p375 → 375.1 → 375.1.1
84D6e1vy5D61D6:2-54Ribosomal_L33375 → 375.1 → 375.1.1
85D7e1vy5D71D7:1-48Ribosomal_L343074 → 3074.1 → 3074.1.1
86D8e1vy5D81D8:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
87D9e1vy5D91D9:1-37Ribosomal_L36919 → 919.1 → 919.1.1
88DDe1vy5DD1DD:127-276Ribosomal_L2_C4 → 4.1 → 4.1.1
89DDe1vy5DD2DD:2-126Ribosomal_L22 → 2.1 → 2.1.1
90DEe1vy5DE1DE:1-204Ribosomal_L31 → 1.1 → 1.1.7
91DFe1vy5DF1DF:6-208Ribosomal_L47559 → 7559.1 → 7559.1.1
92DGe1vy5DG1DG:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
93DHe1vy5DH1DH:83-175Ribosomal_L6318 → 318.1 → 318.1.1
94DHe1vy5DH2DH:2-82Ribosomal_L6318 → 318.1 → 318.1.1
95DIe1vy5DI1DI:1-53Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
96DIe1vy5DI2DI:54-146Ribosomal_L9_C523 → 523.1 → 523.1.1
97DNe1vy5DN1DN:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
98DOe1vy5DO1DO:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
99DPe1vy5DP1DP:1-149Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
100DQe1vy5DQ1DQ:1-141Ribosomal_L16325 → 325.1 → 325.1.5
101DRe1vy5DR1DR:1-118Ribosomal_L17218 → 218.3 → 218.3.1
102DSe1vy5DS1DS:3-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
103DTe1vy5DT1DT:1-131Ribosomal_L194 → 4.1 → 4.1.1
104DUe1vy5DU1DU:2-117Ribosomal_L20143 → 143.2 → 143.2.1
105DVe1vy5DV1DV:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
106DWe1vy5DW1DW:1-112Ribosomal_L22218 → 218.2 → 218.2.1
107DXe1vy5DX1DX:1-95Ribosomal_L23304 → 304.109 → 304.109.1
108DYe1vy5DY1DY:1-107KOW,ribosomal_L244 → 4.1 → 4.1.1
109DZe1vy5DZ1DZ:93-174Ribosomal_TL5_C240 → 240.1 → 240.1.1
110DZe1vy5DZ2DZ:1-92Ribosomal_L25p239 → 239.1 → 239.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors