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PDB 1YNJ

X-RAY DIFFRACTION3.20 Å0 chains23 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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All Domains (23)

#ChainDomain IDRangeFamilyClassification
1Ae1ynjA1A:6-49,A:173-227RNA_pol_L305 → 305.1 → 305.1.1
2Ae1ynjA2A:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
3Be1ynjB1B:6-49,B:173-227RNA_pol_L305 → 305.1 → 305.1.1
4Be1ynjB2B:50-172RNA_pol_A_bac240 → 240.2 → 240.2.1
5Ce1ynjC4C:1-141,C:331-456RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
6Ce1ynjC5C:142-330RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
7Ce1ynjC7C:999-11144043.1.1.04043 → 4043.1 → 4043.1.1
8Ce1ynjC6C:458-591RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
9Ce1ynjC2C:592-662325.1.7.0325 → 325.1 → 325.1.7
10Ce1ynjC8C:699-832RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
11Ce1ynjC9C:664-700,C:827-999RNA_pol_Rpb2_61 → 1.1 → 1.1.2
12De1ynjD1D:610-777RNA_pol_Rpb1_21 → 1.1 → 1.1.2
13De1ynjD2D:949-1109RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
14De1ynjD3D:778-948RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
15De1ynjD4D:3-157,D:453-6164246.1.1.04246 → 4246.1 → 4246.1.1
16De1ynjD5D:158-214325.1.7.0325 → 325.1 → 325.1.7
17De1ynjD6D:392-452325.1.7.0325 → 325.1 → 325.1.7
18De1ynjD7D:341-391325.1.7.0325 → 325.1 → 325.1.7
19De1ynjD8D:215-340RPOC_hybrid325 → 325.1 → 325.1.6
20De1ynjD9D:1110-1240RNA_pol_Rpb1_5275 → 275.1 → 275.1.1
21Je1ynjJ1J:1270-1330325.1.7.0325 → 325.1 → 325.1.7
22Je1ynjJ2J:1253-1269,J:1331-1501RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
23Ke1ynjK1K:2-95RNA_pol_Rpb6152 → 152.1 → 152.1.2

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors