PDB 1YNN
X-RAY DIFFRACTION3.30 Å0 chains23 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
2 domainsChain Bview chain
2 domainsChain Cview chain
7 domainsChain Dview chain
9 domainsChain Jview chain
2 domainsChain Kview chain
1 domainAll Domains (23)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e1ynnA1 | A:6-49,A:173-227 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 2 | A | e1ynnA2 | A:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | B | e1ynnB1 | B:6-49,B:173-227 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 4 | B | e1ynnB2 | B:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 5 | C | e1ynnC4 | C:1-141,C:331-456 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 6 | C | e1ynnC5 | C:142-330 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 7 | C | e1ynnC7 | C:999-1114 | 4043.1.1.0 | 4043 → 4043.1 → 4043.1.1 |
| 8 | C | e1ynnC6 | C:458-591 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 9 | C | e1ynnC2 | C:592-662 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 10 | C | e1ynnC8 | C:699-832 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 11 | C | e1ynnC9 | C:664-700,C:827-999 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 12 | D | e1ynnD1 | D:610-777 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 13 | D | e1ynnD2 | D:158-214 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 14 | D | e1ynnD3 | D:341-391 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 15 | D | e1ynnD4 | D:3-157,D:453-616 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 16 | D | e1ynnD5 | D:778-948 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 17 | D | e1ynnD6 | D:392-452 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 18 | D | e1ynnD7 | D:215-340 | RPOC_hybrid | 325 → 325.1 → 325.1.6 |
| 19 | D | e1ynnD8 | D:949-1109 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 20 | D | e1ynnD9 | D:1110-1240 | RNA_pol_Rpb1_5 | 275 → 275.1 → 275.1.1 |
| 21 | J | e1ynnJ1 | J:1270-1330 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 22 | J | e1ynnJ2 | J:1253-1269,J:1331-1501 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 23 | K | e1ynnK1 | K:2-95 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors