PDB 2JA7
X-RAY DIFFRACTION3.80 Å0 chains60 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
9 domainsChain Bview chain
7 domainsChain Cview chain
2 domainsChain Dview chain
1 domainChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain Iview chain
2 domainsChain Jview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Mview chain
9 domainsChain Nview chain
7 domainsChain Oview chain
2 domainsChain Pview chain
1 domainChain Qview chain
2 domainsChain Rview chain
1 domainChain Sview chain
2 domainsChain Tview chain
1 domainChain Uview chain
2 domainsChain Vview chain
1 domainChain Wview chain
1 domainChain Xview chain
1 domainAll Domains (60)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e2ja7A1 | A:375-435 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 2 | A | e2ja7A2 | A:872-1059 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 3 | A | e2ja7A3 | A:1060-1102,A:1301-1455 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 4 | A | e2ja7A4 | A:1103-1131,A:1243-1300 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 5 | A | e2ja7A5 | A:337-374,A:436-519 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 6 | A | e2ja7A6 | A:2-336 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 7 | A | e2ja7A7 | A:663-871 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 8 | A | e2ja7A8 | A:1132-1242 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 9 | A | e2ja7A9 | A:520-662 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 10 | B | e2ja7B1 | B:18-70,B:90-133,B:164-218,B:405-541 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 11 | B | e2ja7B2 | B:814-850,B:975-1097 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 12 | B | e2ja7B3 | B:1098-1224 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 13 | B | e2ja7B4 | B:631-813 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 14 | B | e2ja7B5 | B:219-404 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 15 | B | e2ja7B6 | B:542-630 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 16 | B | e2ja7B7 | B:851-974 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 17 | C | e2ja7C1 | C:3-37,C:173-268 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 18 | C | e2ja7C2 | C:42-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 19 | D | e2ja7D1 | D:4-71,D:131-221 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 20 | E | e2ja7E1 | E:144-215 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 21 | E | e2ja7E2 | E:5-143 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 22 | F | e2ja7F1 | F:72-155 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 23 | G | e2ja7G1 | G:81-171 | S1 | 2 → 2.1 → 2.1.1 |
| 24 | G | e2ja7G2 | G:1-80 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 25 | H | e2ja7H1 | H:2-146 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 26 | I | e2ja7I1 | I:2-49 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 27 | I | e2ja7I2 | I:50-117 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 28 | J | e2ja7J1 | J:1-65 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 29 | K | e2ja7K1 | K:1-114 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 30 | L | e2ja7L1 | L:25-70 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 31 | M | e2ja7M1 | M:375-435 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 32 | M | e2ja7M2 | M:872-1059 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 33 | M | e2ja7M3 | M:1060-1102,M:1301-1455 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 34 | M | e2ja7M4 | M:1103-1131,M:1243-1300 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 35 | M | e2ja7M5 | M:337-374,M:436-519 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 36 | M | e2ja7M6 | M:2-336 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 37 | M | e2ja7M7 | M:663-871 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 38 | M | e2ja7M8 | M:1132-1242 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 39 | M | e2ja7M9 | M:520-662 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 40 | N | e2ja7N1 | N:542-630 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 41 | N | e2ja7N2 | N:1098-1224 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 42 | N | e2ja7N3 | N:219-404 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 43 | N | e2ja7N4 | N:18-70,N:90-133,N:164-218,N:405-541 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 44 | N | e2ja7N5 | N:851-974 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 45 | N | e2ja7N6 | N:814-850,N:975-1097 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 46 | N | e2ja7N7 | N:631-813 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 47 | O | e2ja7O1 | O:3-37,O:173-268 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 48 | O | e2ja7O2 | O:42-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 49 | P | e2ja7P1 | P:4-71,P:131-221 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 50 | Q | e2ja7Q1 | Q:144-215 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 51 | Q | e2ja7Q2 | Q:5-143 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 52 | R | e2ja7R1 | R:72-155 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 53 | S | e2ja7S1 | S:81-171 | S1 | 2 → 2.1 → 2.1.1 |
| 54 | S | e2ja7S2 | S:1-80 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 55 | T | e2ja7T1 | T:2-146 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 56 | U | e2ja7U1 | U:2-49 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 57 | U | e2ja7U2 | U:50-117 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 58 | V | e2ja7V1 | V:1-65 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 59 | W | e2ja7W1 | W:1-114 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 60 | X | e2ja7X1 | X:25-70 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors