PDB 2O5J
X-RAY DIFFRACTION3.00 Å0 chains42 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
2 domainsChain Bview chain
2 domainsChain Cview chain
7 domainsChain Dview chain
9 domainsChain Eview chain
1 domainChain Kview chain
2 domainsChain Lview chain
2 domainsChain Mview chain
7 domainsChain Nview chain
9 domainsChain Oview chain
1 domainAll Domains (42)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e2o5jA1 | A:1-49,A:173-229 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 2 | A | e2o5jA2 | A:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | B | e2o5jB1 | B:1-49,B:173-229 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 4 | B | e2o5jB2 | B:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 5 | C | e2o5jC4 | C:1-141,C:331-456 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 6 | C | e2o5jC5 | C:142-330 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 7 | C | e2o5jC7 | C:999-1118 | 4043.1.1.0 | 4043 → 4043.1 → 4043.1.1 |
| 8 | C | e2o5jC6 | C:458-591 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 9 | C | e2o5jC2 | C:592-662 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 10 | C | e2o5jC8 | C:699-832 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 11 | C | e2o5jC9 | C:664-700,C:827-999 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 12 | D | e2o5jD4 | D:949-1109 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 13 | D | e2o5jD9 | D:654-696 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 14 | D | e2o5jD3 | D:610-653,D:697-777 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 15 | D | e2o5jD2 | D:778-948 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 16 | D | e2o5jD14 | D:2-165,D:449-610 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 17 | D | e2o5jD15 | D:1110-1200 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 18 | D | e2o5jD16 | D:395-448 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 19 | D | e2o5jD17 | D:166-207,D:391-396 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 20 | D | e2o5jD5 | D:1201-1271,D:1329-1505 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 21 | E | e2o5jE1 | E:2-96 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 22 | K | e2o5jK1 | K:1-49,K:173-229 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 23 | K | e2o5jK2 | K:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 24 | L | e2o5jL1 | L:1-49,L:173-229 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 25 | L | e2o5jL2 | L:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 26 | M | e2o5jM4 | M:1-141,M:331-456 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 27 | M | e2o5jM5 | M:142-330 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 28 | M | e2o5jM7 | M:999-1118 | 4043.1.1.0 | 4043 → 4043.1 → 4043.1.1 |
| 29 | M | e2o5jM6 | M:458-591 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 30 | M | e2o5jM2 | M:592-662 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 31 | M | e2o5jM8 | M:699-832 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 32 | M | e2o5jM9 | M:664-700,M:827-999 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 33 | N | e2o5jN1 | N:654-696 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 34 | N | e2o5jN9 | N:610-653,N:697-777 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 35 | N | e2o5jN17 | N:1201-1271,N:1329-1505 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 36 | N | e2o5jN18 | N:778-948 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 37 | N | e2o5jN19 | N:2-165,N:449-610 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 38 | N | e2o5jN20 | N:949-1109 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 39 | N | e2o5jN21 | N:1110-1200 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 40 | N | e2o5jN22 | N:395-448 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 41 | N | e2o5jN23 | N:166-207,N:391-396 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 42 | O | e2o5jO1 | O:2-96 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors