PDB 2PMZ
X-RAY DIFFRACTION3.40 Å0 chains48 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
5 domainsChain Bview chain
7 domainsChain Cview chain
2 domainsChain Dview chain
2 domainsChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Nview chain
1 domainChain Pview chain
1 domainChain Qview chain
5 domainsChain Rview chain
7 domainsChain Sview chain
2 domainsChain Tview chain
2 domainsChain Uview chain
1 domainChain Vview chain
1 domainChain Wview chain
1 domainChain Xview chain
1 domainChain Yview chain
1 domainChain Zview chain
1 domainAll Domains (48)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e2pmzA1 | A:4-306 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 2 | A | e2pmzA2 | A:307-347,A:411-494 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 3 | A | e2pmzA3 | A:348-410 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 4 | A | e2pmzA4 | A:495-644 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 5 | A | e2pmzA5 | A:645-879 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 6 | B | e2pmzB1 | B:473-572 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 7 | B | e2pmzB2 | B:168-341 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 8 | B | e2pmzB3 | B:713-749,B:873-995 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 9 | B | e2pmzB4 | B:5-167,B:342-472 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 10 | B | e2pmzB5 | B:996-1119 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 11 | B | e2pmzB6 | B:750-872 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 12 | B | e2pmzB7 | B:573-712 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 13 | C | e2pmzC1 | C:66-146,C:238-395 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 14 | C | e2pmzC2 | C:11-65 | 4957.1.1.0 | 4957 → 4957.1 → 4957.1.1 |
| 15 | D | e2pmzD1 | D:2-36,D:159-265 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 16 | D | e2pmzD2 | D:37-158 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 17 | E | e2pmzE1 | E:79-180 | S1 | 2 → 2.1 → 2.1.1 |
| 18 | E | e2pmzE2 | E:1-78 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 19 | F | e2pmzF1 | F:1-89 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 20 | G | e2pmzG1 | G:66-146,G:238-395 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 21 | G | e2pmzG2 | G:11-65 | 4957.1.1.0 | 4957 → 4957.1 → 4957.1.1 |
| 22 | H | e2pmzH1 | H:9-82 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 23 | K | e2pmzK1 | K:11-92 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 24 | L | e2pmzL1 | L:1-92 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 25 | N | e2pmzN1 | N:1-64 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 26 | P | e2pmzP1 | P:6-48 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 27 | Q | e2pmzQ1 | Q:495-644 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 28 | Q | e2pmzQ2 | Q:348-410 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 29 | Q | e2pmzQ3 | Q:4-96,Q:174-306 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 30 | Q | e2pmzQ4 | Q:645-879 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 31 | Q | e2pmzQ5 | Q:307-347,Q:411-494 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 32 | R | e2pmzR1 | R:473-572 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 33 | R | e2pmzR2 | R:573-712 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 34 | R | e2pmzR3 | R:168-341 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 35 | R | e2pmzR4 | R:713-749,R:873-995 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 36 | R | e2pmzR5 | R:996-1119 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 37 | R | e2pmzR6 | R:5-167,R:342-472 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 38 | R | e2pmzR7 | R:750-872 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 39 | S | e2pmzS1 | S:2-36,S:159-265 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 40 | S | e2pmzS2 | S:37-158 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 41 | T | e2pmzT1 | T:79-180 | S1 | 2 → 2.1 → 2.1.1 |
| 42 | T | e2pmzT2 | T:1-78 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 43 | U | e2pmzU1 | U:1-89 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 44 | V | e2pmzV1 | V:9-82 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 45 | W | e2pmzW1 | W:11-92 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 46 | X | e2pmzX1 | X:1-92 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 47 | Y | e2pmzY1 | Y:1-64 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 48 | Z | e2pmzZ1 | Z:6-48 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors