PDB 2WAQ
X-RAY DIFFRACTION3.35 Å0 chains27 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Bview chain
7 domainsChain Cview chain
4 domainsChain Dview chain
2 domainsChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
1 domainChain Hview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Nview chain
1 domainChain Pview chain
1 domainChain Qview chain
1 domainAll Domains (27)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e2waqA1 | A:307-494 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 2 | A | e2waqA2 | A:495-644 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 3 | A | e2waqA3 | A:645-879 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 4 | A | e2waqA4 | A:4-306 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 5 | B | e2waqB1 | B:576-715 | RNA_pol_Rpb2_5 | 4042 → 4042.1 → 4042.1.1 |
| 6 | B | e2waqB2 | B:716-752,B:876-998 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 7 | B | e2waqB3 | B:8-170,B:345-475 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 8 | B | e2waqB4 | B:999-1122 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 9 | B | e2waqB5 | B:753-875 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 10 | B | e2waqB6 | B:476-575 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 11 | B | e2waqB7 | B:171-344 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 12 | C | e2waqC1 | C:11-65 | 4957.1.1.0 | 4957 → 4957.1 → 4957.1.1 |
| 13 | C | e2waqC2 | C:66-115,C:276-394 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 14 | C | e2waqC3 | C:116-147,C:233-275 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 15 | C | e2waqC4 | C:148-232 | 4955.1.1.0 | 4955 → 4955.1 → 4955.1.1 |
| 16 | D | e2waqD1 | D:2-36,D:159-264 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 17 | D | e2waqD2 | D:37-158 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 18 | E | e2waqE1 | E:79-177 | S1 | 2 → 2.1 → 2.1.1 |
| 19 | E | e2waqE2 | E:1-78 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 20 | F | e2waqF1 | F:3-92 | 102.1.1.0 | 102 → 102.1 → 102.1.1 |
| 21 | G | e2waqG1 | G:5-117 | RNA_pol_RpbG | 2 → 2.1 → 2.1.1 |
| 22 | H | e2waqH1 | H:9-82 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 23 | K | e2waqK1 | K:9-94 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 24 | L | e2waqL1 | L:1-91 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 25 | N | e2waqN1 | N:1-64 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 26 | P | e2waqP1 | P:3-48 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 27 | Q | e2waqQ1 | Q:38-82 | RNA_pol_Rpo13 | 4146 → 4146.1 → 4146.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors