PDB 2Y0S
X-RAY DIFFRACTION3.79 Å0 chains54 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
4 domainsChain Bview chain
7 domainsChain Cview chain
4 domainsChain Dview chain
2 domainsChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
1 domainChain Hview chain
1 domainChain Iview chain
1 domainChain Jview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Mview chain
1 domainChain Nview chain
1 domainChain Oview chain
1 domainChain Pview chain
1 domainChain Qview chain
1 domainChain Rview chain
7 domainsChain Sview chain
2 domainsChain Tview chain
2 domainsChain Uview chain
1 domainChain Vview chain
1 domainChain Wview chain
4 domainsChain Xview chain
1 domainChain Yview chain
4 domainsChain Zview chain
1 domainAll Domains (54)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e2y0sA1 | A:4-151,A:175-306 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 2 | A | e2y0sA2 | A:645-879 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 3 | A | e2y0sA3 | A:307-494 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 4 | A | e2y0sA4 | A:495-644 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 5 | B | e2y0sB1 | B:171-344 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 6 | B | e2y0sB2 | B:576-715 | RNA_pol_Rpb2_5 | 4042 → 4042.1 → 4042.1.1 |
| 7 | B | e2y0sB3 | B:999-1122 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 8 | B | e2y0sB4 | B:716-752,B:876-998 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 9 | B | e2y0sB5 | B:753-875 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 10 | B | e2y0sB6 | B:8-170,B:345-475 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 11 | B | e2y0sB7 | B:476-575 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 12 | C | e2y0sC1 | C:148-232 | 4955.1.1.0 | 4955 → 4955.1 → 4955.1.1 |
| 13 | C | e2y0sC2 | C:66-115,C:276-395 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 14 | C | e2y0sC3 | C:11-65 | 4957.1.1.0 | 4957 → 4957.1 → 4957.1.1 |
| 15 | C | e2y0sC4 | C:116-147,C:233-275 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 16 | D | e2y0sD1 | D:2-36,D:159-264 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 17 | D | e2y0sD2 | D:37-158 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 18 | E | e2y0sE3 | E:67-170 | S1 | 2 → 2.1 → 2.1.1 |
| 19 | E | e2y0sE4 | E:1-66 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 20 | F | e2y0sF1 | F:3-92 | 102.1.1.0 | 102 → 102.1 → 102.1.1 |
| 21 | G | e2y0sG1 | G:7-116 | RNA_pol_RpbG | 2 → 2.1 → 2.1.1 |
| 22 | H | e2y0sH1 | H:9-82 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 23 | I | e2y0sI1 | I:11-92 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 24 | J | e2y0sJ1 | J:39-77 | RNA_pol_Rpo13 | 4146 → 4146.1 → 4146.1.1 |
| 25 | K | e2y0sK1 | K:11-92 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 26 | L | e2y0sL1 | L:1-91 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 27 | M | e2y0sM1 | M:1-91 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 28 | N | e2y0sN1 | N:1-64 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 29 | O | e2y0sO1 | O:1-64 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 30 | P | e2y0sP1 | P:4-48 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 31 | Q | e2y0sQ1 | Q:39-77 | RNA_pol_Rpo13 | 4146 → 4146.1 → 4146.1.1 |
| 32 | R | e2y0sR1 | R:716-752,R:876-998 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 33 | R | e2y0sR2 | R:8-170,R:345-475 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 34 | R | e2y0sR3 | R:999-1122 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 35 | R | e2y0sR4 | R:753-875 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 36 | R | e2y0sR5 | R:171-344 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 37 | R | e2y0sR6 | R:576-715 | RNA_pol_Rpb2_5 | 4042 → 4042.1 → 4042.1.1 |
| 38 | R | e2y0sR7 | R:476-575 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 39 | S | e2y0sS1 | S:2-36,S:159-264 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 40 | S | e2y0sS2 | S:37-158 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 41 | T | e2y0sT3 | T:67-170 | S1 | 2 → 2.1 → 2.1.1 |
| 42 | T | e2y0sT4 | T:1-66 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 43 | U | e2y0sU1 | U:3-92 | 102.1.1.0 | 102 → 102.1 → 102.1.1 |
| 44 | V | e2y0sV1 | V:7-116 | RNA_pol_RpbG | 2 → 2.1 → 2.1.1 |
| 45 | W | e2y0sW1 | W:495-644 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 46 | W | e2y0sW2 | W:4-151,W:175-306 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 47 | W | e2y0sW3 | W:307-494 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 48 | W | e2y0sW4 | W:645-879 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 49 | X | e2y0sX1 | X:4-48 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 50 | Y | e2y0sY1 | Y:11-65 | 4957.1.1.0 | 4957 → 4957.1 → 4957.1.1 |
| 51 | Y | e2y0sY2 | Y:148-232 | 4955.1.1.0 | 4955 → 4955.1 → 4955.1.1 |
| 52 | Y | e2y0sY3 | Y:66-115,Y:276-395 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 53 | Y | e2y0sY4 | Y:116-147,Y:233-275 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 54 | Z | e2y0sZ1 | Z:9-82 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors