PDB 3DXJ
X-RAY DIFFRACTION3.00 Å0 chains54 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
2 domainsChain Bview chain
2 domainsChain Cview chain
7 domainsChain Dview chain
12 domainsChain Eview chain
1 domainChain Fview chain
3 domainsChain Kview chain
2 domainsChain Lview chain
2 domainsChain Mview chain
7 domainsChain Nview chain
12 domainsChain Oview chain
1 domainChain Pview chain
3 domainsAll Domains (54)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e3dxjA1 | A:1-49,A:173-231 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 2 | A | e3dxjA2 | A:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 3 | B | e3dxjB1 | B:1-49,B:173-243 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 4 | B | e3dxjB2 | B:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 5 | C | e3dxjC4 | C:1-141,C:331-456 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 6 | C | e3dxjC5 | C:142-330 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 7 | C | e3dxjC7 | C:999-1118 | 4043.1.1.0 | 4043 → 4043.1 → 4043.1.1 |
| 8 | C | e3dxjC6 | C:458-591 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 9 | C | e3dxjC2 | C:592-662 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 10 | C | e3dxjC8 | C:699-832 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 11 | C | e3dxjC9 | C:664-700,C:827-999 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 12 | D | e3dxjD1 | D:208-215,D:341-389 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 13 | D | e3dxjD2 | D:610-653,D:697-777 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 14 | D | e3dxjD3 | D:1270-1330 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 15 | D | e3dxjD4 | D:2-165,D:449-609 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 16 | D | e3dxjD5 | D:949-1109 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 17 | D | e3dxjD6 | D:166-207,D:390-395 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 18 | D | e3dxjD7 | D:778-948 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 19 | D | e3dxjD8 | D:654-696 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 20 | D | e3dxjD9 | D:396-448 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 21 | D | e3dxjD10 | D:216-340 | RPOC_hybrid | 325 → 325.1 → 325.1.6 |
| 22 | D | e3dxjD11 | D:1201-1269,D:1331-1505 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 23 | D | e3dxjD12 | D:1110-1200 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 24 | E | e3dxjE1 | E:2-96 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 25 | F | e3dxjF3 | F:74-257 | Sigma70_r1_2,Sigma70_r2 | 142 → 142.1 → 142.1.1 |
| 26 | F | e3dxjF4 | F:318-422 | Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 27 | F | e3dxjF5 | F:258-317 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 28 | K | e3dxjK1 | K:1-49,K:173-231 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 29 | K | e3dxjK2 | K:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 30 | L | e3dxjL2 | L:50-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 31 | L | e3dxjL3 | L:1-49,L:173-243 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 32 | M | e3dxjM4 | M:1-141,M:331-456 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 33 | M | e3dxjM5 | M:142-330 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 34 | M | e3dxjM7 | M:999-1118 | 4043.1.1.0 | 4043 → 4043.1 → 4043.1.1 |
| 35 | M | e3dxjM6 | M:458-591 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 36 | M | e3dxjM2 | M:592-662 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 37 | M | e3dxjM8 | M:699-832 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 38 | M | e3dxjM9 | M:664-700,M:827-999 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 39 | N | e3dxjN12 | N:1110-1200 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 40 | N | e3dxjN5 | N:1270-1330 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 41 | N | e3dxjN6 | N:166-207,N:390-395 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 42 | N | e3dxjN7 | N:208-215,N:341-389 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 43 | N | e3dxjN3 | N:216-340 | RPOC_hybrid | 325 → 325.1 → 325.1.6 |
| 44 | N | e3dxjN8 | N:396-448 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 45 | N | e3dxjN2 | N:654-696 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 46 | N | e3dxjN13 | N:778-948 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 47 | N | e3dxjN9 | N:1201-1269,N:1331-1505 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 48 | N | e3dxjN4 | N:949-1109 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 49 | N | e3dxjN1 | N:610-653,N:697-777 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 50 | N | e3dxjN10 | N:2-165,N:449-609 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 51 | O | e3dxjO1 | O:2-96 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 52 | P | e3dxjP3 | P:74-257 | Sigma70_r1_2,Sigma70_r2 | 142 → 142.1 → 142.1.1 |
| 53 | P | e3dxjP4 | P:318-422 | Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 54 | P | e3dxjP5 | P:258-317 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors