PDB 3HKZ
X-RAY DIFFRACTION3.40 Å0 chains54 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Bview chain
7 domainsChain Cview chain
4 domainsChain Dview chain
2 domainsChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
1 domainChain Hview chain
1 domainChain Jview chain
7 domainsChain Kview chain
1 domainChain Lview chain
1 domainChain Mview chain
4 domainsChain Nview chain
1 domainChain Oview chain
2 domainsChain Pview chain
1 domainChain Qview chain
2 domainsChain Rview chain
1 domainChain Sview chain
1 domainChain Tview chain
1 domainChain Uview chain
1 domainChain Vview chain
1 domainChain Wview chain
1 domainChain Xview chain
1 domainChain Yview chain
1 domainChain Zview chain
1 domainAll Domains (54)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e3hkzA1 | A:307-494 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 2 | A | e3hkzA2 | A:495-644 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 3 | A | e3hkzA3 | A:645-879 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 4 | A | e3hkzA4 | A:4-306 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 5 | B | e3hkzB1 | B:750-872 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 6 | B | e3hkzB2 | B:168-341 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 7 | B | e3hkzB3 | B:713-749,B:873-995 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 8 | B | e3hkzB4 | B:573-712 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 9 | B | e3hkzB5 | B:996-1119 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 10 | B | e3hkzB6 | B:473-572 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 11 | B | e3hkzB7 | B:5-167,B:342-472 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 12 | C | e3hkzC1 | C:11-65 | 4957.1.1.0 | 4957 → 4957.1 → 4957.1.1 |
| 13 | C | e3hkzC2 | C:66-115,C:276-395 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 14 | C | e3hkzC3 | C:116-147,C:233-275 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 15 | C | e3hkzC4 | C:148-232 | 4955.1.1.0 | 4955 → 4955.1 → 4955.1.1 |
| 16 | D | e3hkzD1 | D:2-36,D:159-265 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 17 | D | e3hkzD2 | D:37-158 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 18 | E | e3hkzE1 | E:79-180 | S1 | 2 → 2.1 → 2.1.1 |
| 19 | E | e3hkzE2 | E:1-78 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 20 | F | e3hkzF1 | F:1-89 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 21 | G | e3hkzG1 | G:5-117 | RNA_pol_RpbG | 2 → 2.1 → 2.1.1 |
| 22 | H | e3hkzH1 | H:9-82 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 23 | I | e3hkzI1 | I:495-644 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 24 | I | e3hkzI2 | I:645-879 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 25 | I | e3hkzI3 | I:4-306 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 26 | I | e3hkzI4 | I:307-494 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 27 | J | e3hkzJ1 | J:713-749,J:873-995 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 28 | J | e3hkzJ2 | J:996-1119 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 29 | J | e3hkzJ3 | J:750-872 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 30 | J | e3hkzJ4 | J:5-167,J:342-472 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 31 | J | e3hkzJ5 | J:473-572 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 32 | J | e3hkzJ6 | J:573-712 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 33 | J | e3hkzJ7 | J:168-341 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 34 | K | e3hkzK1 | K:11-92 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 35 | L | e3hkzL1 | L:1-92 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 36 | M | e3hkzM1 | M:148-232 | 4955.1.1.0 | 4955 → 4955.1 → 4955.1.1 |
| 37 | M | e3hkzM2 | M:116-147,M:233-275 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 38 | M | e3hkzM3 | M:11-65 | 4957.1.1.0 | 4957 → 4957.1 → 4957.1.1 |
| 39 | M | e3hkzM4 | M:66-115,M:276-395 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 40 | N | e3hkzN1 | N:1-64 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 41 | O | e3hkzO1 | O:37-158 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 42 | O | e3hkzO2 | O:2-36,O:159-265 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 43 | P | e3hkzP1 | P:6-48 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 44 | Q | e3hkzQ1 | Q:79-180 | S1 | 2 → 2.1 → 2.1.1 |
| 45 | Q | e3hkzQ2 | Q:1-78 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 46 | R | e3hkzR1 | R:1-89 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 47 | S | e3hkzS1 | S:5-117 | RNA_pol_RpbG | 2 → 2.1 → 2.1.1 |
| 48 | T | e3hkzT1 | T:9-82 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 49 | U | e3hkzU1 | U:11-92 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 50 | V | e3hkzV1 | V:1-92 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 51 | W | e3hkzW1 | W:1-64 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 52 | X | e3hkzX1 | X:6-48 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 53 | Y | e3hkzY1 | Y:38-82 | RNA_pol_Rpo13 | 4146 → 4146.1 → 4146.1.1 |
| 54 | Z | e3hkzZ1 | Z:38-82 | RNA_pol_Rpo13 | 4146 → 4146.1 → 4146.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors