PDB 4JK1
X-RAY DIFFRACTION3.90 Å0 chains54 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Bview chain
2 domainsChain Cview chain
10 domainsChain Dview chain
8 domainsChain Eview chain
1 domainChain Fview chain
2 domainsChain Gview chain
2 domainsChain Hview chain
10 domainsChain Iview chain
8 domainsChain Jview chain
1 domainChain Xview chain
4 domainsAll Domains (54)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e4jk1A7 | A:53-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 2 | A | e4jk1A8 | A:235-325 | RNA_pol_A_CTD | 102 → 102.1 → 102.1.1 |
| 3 | A | e4jk1A9 | A:3-52,A:179-234 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 4 | B | e4jk1B3 | B:53-173 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 5 | B | e4jk1B4 | B:6-52,B:174-236 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 6 | C | e4jk1C1 | C:227-234,C:289-342 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 7 | C | e4jk1C2 | C:1238-1342 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 8 | C | e4jk1C3 | C:8-152,C:450-577 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 9 | C | e4jk1C5 | C:939-1038 | 3681.1.1.0 | 3681 → 3681.1 → 3681.1.1 |
| 10 | C | e4jk1C8 | C:235-288 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 11 | C | e4jk1C9 | C:578-714 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 12 | C | e4jk1C10 | C:153-226,C:343-451 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 13 | C | e4jk1C11 | C:791-828,C:1058-1237 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 14 | C | e4jk1C12 | C:828-938 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 15 | C | e4jk1C4 | C:713-790 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 16 | D | e4jk1D1 | D:811-894 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 17 | D | e4jk1D2 | D:334-377,D:418-498 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 18 | D | e4jk1D3 | D:895-931,D:1135-1151,D:1216-1376 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 19 | D | e4jk1D4 | D:378-417 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 20 | D | e4jk1D5 | D:8-333 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 21 | D | e4jk1D6 | D:499-638 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 22 | D | e4jk1D7 | D:1152-1215 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 23 | D | e4jk1D8 | D:639-810 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 24 | E | e4jk1E1 | E:2-91 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 25 | F | e4jk1F3 | F:53-173 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 26 | F | e4jk1F4 | F:6-52,F:174-234 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 27 | G | e4jk1G3 | G:53-173 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 28 | G | e4jk1G4 | G:6-52,G:174-232 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 29 | H | e4jk1H1 | H:227-234,H:289-342 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 30 | H | e4jk1H2 | H:1238-1342 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 31 | H | e4jk1H3 | H:8-152,H:450-577 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 32 | H | e4jk1H5 | H:939-1038 | 3681.1.1.0 | 3681 → 3681.1 → 3681.1.1 |
| 33 | H | e4jk1H8 | H:235-288 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 34 | H | e4jk1H9 | H:578-714 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 35 | H | e4jk1H10 | H:153-226,H:343-451 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 36 | H | e4jk1H11 | H:791-828,H:1058-1237 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 37 | H | e4jk1H12 | H:828-938 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 38 | H | e4jk1H4 | H:713-790 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 39 | I | e4jk1I1 | I:499-638 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 40 | I | e4jk1I2 | I:8-333 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 41 | I | e4jk1I3 | I:639-810 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 42 | I | e4jk1I4 | I:895-931,I:1135-1151,I:1216-1376 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 43 | I | e4jk1I5 | I:1152-1215 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 44 | I | e4jk1I6 | I:811-894 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 45 | I | e4jk1I7 | I:334-377,I:418-498 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 46 | I | e4jk1I8 | I:378-417 | 4951.1.1.0 | 4951 → 4951.1 → 4951.1.1 |
| 47 | J | e4jk1J1 | J:2-77 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 48 | X | e4jk1X1 | X:6-64 | Sigma70_r1_1 | 3498 → 3498.1 → 3498.1.1 |
| 49 | X | e4jk1X2 | X:95-154,X:212-446 | Sigma70_r1_2,Sigma70_r2,Sigma70_ner | 142 → 142.1 → 142.1.1 |
| 50 | X | e4jk1X3 | X:508-609 | Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 51 | X | e4jk1X4 | X:447-507 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 52 | Y | e4jk1Y1 | Y:447-507 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 53 | Y | e4jk1Y2 | Y:95-154,Y:212-446 | Sigma70_r1_2,Sigma70_r2,Sigma70_ner | 142 → 142.1 → 142.1.1 |
| 54 | Y | e4jk1Y3 | Y:508-609 | Sigma70_r4 | 101 → 101.1 → 101.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors