PDB 4JKR
X-RAY DIFFRACTION4.20 Å0 chains54 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
2 domainsChain Bview chain
2 domainsChain Cview chain
10 domainsChain Dview chain
9 domainsChain Eview chain
1 domainChain Gview chain
2 domainsChain Hview chain
2 domainsChain Iview chain
10 domainsChain Jview chain
9 domainsChain Kview chain
1 domainAll Domains (54)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e4jkrA3 | A:53-173 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 2 | A | e4jkrA4 | A:6-52,A:174-232 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 3 | B | e4jkrB3 | B:53-173 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 4 | B | e4jkrB4 | B:6-52,B:174-232 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 5 | C | e4jkrC1 | C:939-1038 | 3681.1.1.0 | 3681 → 3681.1 → 3681.1.1 |
| 6 | C | e4jkrC2 | C:227-234,C:289-342 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 7 | C | e4jkrC3 | C:1238-1342 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 8 | C | e4jkrC4 | C:3-152,C:450-577 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 9 | C | e4jkrC8 | C:235-288 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 10 | C | e4jkrC9 | C:578-714 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 11 | C | e4jkrC10 | C:153-226,C:343-451 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 12 | C | e4jkrC11 | C:791-828,C:1060-1237 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 13 | C | e4jkrC12 | C:828-938,C:1039-1059 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 14 | C | e4jkrC5 | C:713-790 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 15 | D | e4jkrD1 | D:10-341 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 16 | D | e4jkrD2 | D:639-810 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 17 | D | e4jkrD5 | D:499-638 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 18 | D | e4jkrD7 | D:811-894 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 19 | D | e4jkrD3 | D:895-931,D:1214-1376 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 20 | D | e4jkrD6 | D:334-498 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 21 | D | e4jkrD8 | D:1023-1128 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 22 | D | e4jkrD9 | D:944-1022 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 23 | D | e4jkrD10 | D:1136-1215 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 24 | E | e4jkrE1 | E:2-91 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 25 | F | e4jkrF1 | F:516-613 | Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 26 | F | e4jkrF2 | F:447-515 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 27 | F | e4jkrF3 | F:95-171,F:210-446 | Sigma70_r1_2,Sigma70_r2,Sigma70_ner | 142 → 142.1 → 142.1.1 |
| 28 | G | e4jkrG3 | G:53-173 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 29 | G | e4jkrG4 | G:6-52,G:174-232 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 30 | H | e4jkrH3 | H:53-173 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 31 | H | e4jkrH4 | H:6-52,H:174-232 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 32 | I | e4jkrI4 | I:578-714 | RNA_pol_Rpb2_45 | 4042 → 4042.1 → 4042.1.1 |
| 33 | I | e4jkrI10 | I:3-152,I:450-577 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 34 | I | e4jkrI12 | I:153-226,I:343-451 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 35 | I | e4jkrI13 | I:227-234,I:289-342 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 36 | I | e4jkrI16 | I:235-288 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 37 | I | e4jkrI17 | I:1238-1342 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 38 | I | e4jkrI18 | I:939-1038 | 3681.1.1.0 | 3681 → 3681.1 → 3681.1.1 |
| 39 | I | e4jkrI8 | I:791-828,I:1058-1237 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 40 | I | e4jkrI9 | I:828-938 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 41 | I | e4jkrI1 | I:713-790 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 42 | J | e4jkrJ2 | J:639-810 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 43 | J | e4jkrJ4 | J:499-638 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 44 | J | e4jkrJ7 | J:811-894 | 275.1.1.0 | 275 → 275.1 → 275.1.1 |
| 45 | J | e4jkrJ1 | J:14-341 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 46 | J | e4jkrJ3 | J:895-931,J:1214-1376 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 47 | J | e4jkrJ5 | J:334-498 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 48 | J | e4jkrJ6 | J:1023-1128 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 49 | J | e4jkrJ8 | J:944-1022 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 50 | J | e4jkrJ9 | J:1136-1215 | 325.1.7.0 | 325 → 325.1 → 325.1.7 |
| 51 | K | e4jkrK1 | K:2-91 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.2 |
| 52 | L | e4jkrL1 | L:447-515 | Sigma70_r3 | 101 → 101.1 → 101.1.1 |
| 53 | L | e4jkrL2 | L:516-613 | Sigma70_r4 | 101 → 101.1 → 101.1.1 |
| 54 | L | e4jkrL3 | L:95-171,L:210-446 | Sigma70_r1_2,Sigma70_r2,Sigma70_ner | 142 → 142.1 → 142.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors