PDB 4V8S
X-RAY DIFFRACTION4.30 Å0 chains54 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain AIview chain
1 domainChain AJview chain
1 domainChain AMview chain
1 domainChain AOview chain
1 domainChain ARview chain
7 domainsChain ASview chain
2 domainsChain ATview chain
2 domainsChain AUview chain
1 domainChain AVview chain
1 domainChain AWview chain
4 domainsChain AXview chain
1 domainChain AYview chain
4 domainsChain AZview chain
1 domainChain BAview chain
4 domainsChain BBview chain
7 domainsChain BCview chain
4 domainsChain BDview chain
2 domainsChain BEview chain
2 domainsChain BFview chain
1 domainChain BGview chain
1 domainChain BHview chain
1 domainChain BKview chain
1 domainChain BLview chain
1 domainChain BNview chain
1 domainChain BPview chain
1 domainChain BQview chain
1 domainAll Domains (54)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | AI | e4v8sAI1 | AI:11-94 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 2 | AJ | e4v8sAJ1 | AJ:33-81 | RNA_pol_Rpo13 | 4146 → 4146.1 → 4146.1.1 |
| 3 | AM | e4v8sAM1 | AM:1-91 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 4 | AO | e4v8sAO1 | AO:1-65 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 5 | AR | e4v8sAR1 | AR:753-875 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 6 | AR | e4v8sAR2 | AR:171-344 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 7 | AR | e4v8sAR3 | AR:7-170,AR:345-475 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 8 | AR | e4v8sAR4 | AR:476-575 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 9 | AR | e4v8sAR5 | AR:576-715 | RNA_pol_Rpb2_5 | 4042 → 4042.1 → 4042.1.1 |
| 10 | AR | e4v8sAR6 | AR:999-1125 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 11 | AR | e4v8sAR7 | AR:716-752,AR:876-998 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 12 | AS | e4v8sAS1 | AS:2-36,AS:159-263 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 13 | AS | e4v8sAS2 | AS:37-158 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 14 | AT | e4v8sAT1 | AT:1-78 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 15 | AT | e4v8sAT2 | AT:79-178 | S1 | 2 → 2.1 → 2.1.1 |
| 16 | AU | e4v8sAU1 | AU:3-107 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 17 | AV | e4v8sAV1 | AV:5-117 | RNA_pol_RpbG | 2 → 2.1 → 2.1.1 |
| 18 | AW | e4v8sAW1 | AW:3-306 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 19 | AW | e4v8sAW2 | AW:495-644 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 20 | AW | e4v8sAW3 | AW:645-879 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 21 | AW | e4v8sAW4 | AW:307-494 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 22 | AX | e4v8sAX1 | AX:5-48 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 23 | AY | e4v8sAY1 | AY:116-147,AY:233-275 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 24 | AY | e4v8sAY2 | AY:148-232 | 4955.1.1.0 | 4955 → 4955.1 → 4955.1.1 |
| 25 | AY | e4v8sAY3 | AY:66-115,AY:276-394 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 26 | AY | e4v8sAY4 | AY:6-65 | 4957.1.1.0 | 4957 → 4957.1 → 4957.1.1 |
| 27 | AZ | e4v8sAZ1 | AZ:8-83 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 28 | BA | e4v8sBA1 | BA:3-306 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 29 | BA | e4v8sBA2 | BA:645-879 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 30 | BA | e4v8sBA3 | BA:495-644 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 31 | BA | e4v8sBA4 | BA:307-494 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 32 | BB | e4v8sBB1 | BB:999-1125 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 33 | BB | e4v8sBB2 | BB:753-875 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 34 | BB | e4v8sBB3 | BB:7-170,BB:345-475 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 35 | BB | e4v8sBB4 | BB:476-575 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 36 | BB | e4v8sBB5 | BB:576-715 | RNA_pol_Rpb2_5 | 4042 → 4042.1 → 4042.1.1 |
| 37 | BB | e4v8sBB6 | BB:716-752,BB:876-998 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 38 | BB | e4v8sBB7 | BB:171-344 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 39 | BC | e4v8sBC1 | BC:116-147,BC:233-275 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 40 | BC | e4v8sBC2 | BC:148-232 | 4955.1.1.0 | 4955 → 4955.1 → 4955.1.1 |
| 41 | BC | e4v8sBC3 | BC:6-65 | 4957.1.1.0 | 4957 → 4957.1 → 4957.1.1 |
| 42 | BC | e4v8sBC4 | BC:66-115,BC:276-394 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 43 | BD | e4v8sBD1 | BD:37-158 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 44 | BD | e4v8sBD2 | BD:2-36,BD:159-263 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 45 | BE | e4v8sBE1 | BE:1-78 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 46 | BE | e4v8sBE2 | BE:79-178 | S1 | 2 → 2.1 → 2.1.1 |
| 47 | BF | e4v8sBF1 | BF:3-107 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 48 | BG | e4v8sBG1 | BG:5-117 | RNA_pol_RpbG | 2 → 2.1 → 2.1.1 |
| 49 | BH | e4v8sBH1 | BH:8-83 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 50 | BK | e4v8sBK1 | BK:11-94 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 51 | BL | e4v8sBL1 | BL:1-91 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 52 | BN | e4v8sBN1 | BN:1-65 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 53 | BP | e4v8sBP1 | BP:5-48 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 54 | BQ | e4v8sBQ1 | BQ:32-81 | RNA_pol_Rpo13 | 4146 → 4146.1 → 4146.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors