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PDB 4YFK

X-RAY DIFFRACTION3.50 Å0 chains52 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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All Domains (52)

#ChainDomain IDRangeFamilyClassification
1Ae4yfkA1A:7-52,A:179-236RNA_pol_L305 → 305.1 → 305.1.1
2Ae4yfkA2A:237-325RNA_pol_A_CTD102 → 102.1 → 102.1.1
3Ae4yfkA3A:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
4Be4yfkB1B:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
5Be4yfkB2B:6-52,B:179-233RNA_pol_L305 → 305.1 → 305.1.1
6Ce4yfkC1C:939-10573681.1.1.03681 → 3681.1 → 3681.1.1
7Ce4yfkC2C:828-938RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
8Ce4yfkC3C:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
9Ce4yfkC4C:1238-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
10Ce4yfkC5C:3-152,C:450-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
11Ce4yfkC6C:227-234,C:289-342275.1.1.0275 → 275.1 → 275.1.1
12Ce4yfkC7C:578-714RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
13Ce4yfkC8C:235-288275.1.1.0275 → 275.1 → 275.1.1
14Ce4yfkC9C:153-226,C:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
15Ce4yfkC10C:791-828,C:1058-1237RNA_pol_Rpb2_61 → 1.1 → 1.1.2
16De4yfkD1D:378-4174951.1.1.04951 → 4951.1 → 4951.1.1
17De4yfkD2D:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
18De4yfkD3D:811-894275.1.1.0275 → 275.1 → 275.1.1
19De4yfkD4D:895-931,D:1135-1151,D:1216-1376RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
20De4yfkD5D:334-377,D:418-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
21De4yfkD6D:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
22De4yfkD7D:1152-1215325.1.7.0325 → 325.1 → 325.1.7
23De4yfkD8D:8-333RNA_pol_Rpb1_14246 → 4246.1 → 4246.1.1
24Ee4yfkE1E:2-90RNA_pol_Rpb6152 → 152.1 → 152.1.2
25Fe4yfkF1F:94-167,F:213-447Sigma70_r1_2,Sigma70_r2,Sigma70_ner142 → 142.1 → 142.1.1
26Fe4yfkF2F:502-612Sigma70_r3,Sigma70_r4101 → 101.1 → 101.1.1
27Fe4yfkF3F:448-501Sigma70_r3101 → 101.1 → 101.1.1
28Ge4yfkG1G:7-52,G:179-233RNA_pol_L305 → 305.1 → 305.1.1
29Ge4yfkG2G:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
30He4yfkH1H:6-52,H:179-233RNA_pol_L305 → 305.1 → 305.1.1
31He4yfkH2H:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
32Ie4yfkI1I:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
33Ie4yfkI2I:235-288275.1.1.0275 → 275.1 → 275.1.1
34Ie4yfkI3I:152-225,I:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
35Ie4yfkI4I:1240-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
36Ie4yfkI5I:939-10443681.1.1.03681 → 3681.1 → 3681.1.1
37Ie4yfkI6I:3-151,I:452-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
38Ie4yfkI7I:578-712RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
39Ie4yfkI8I:828-938,I:1045-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
40Ie4yfkI9I:226-234,I:289-342275.1.1.0275 → 275.1 → 275.1.1
41Ie4yfkI10I:791-827,I:1063-1239RNA_pol_Rpb2_61 → 1.1 → 1.1.2
42Je4yfkJ8J:1214-1375RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
43Je4yfkJ2J:16-3414246.1.1.04246 → 4246.1 → 4246.1.1
44Je4yfkJ3J:639-811RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
45Je4yfkJ4J:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
46Je4yfkJ5J:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
47Je4yfkJ6J:812-931RNA_pol_Rpb1_5275 → 275.1 → 275.1.1
48Je4yfkJ7J:1137-1215325.1.7.0325 → 325.1 → 325.1.7
49Ke4yfkK1K:2-80RNA_pol_Rpb6152 → 152.1 → 152.1.2
50Le4yfkL1L:94-167,L:213-446Sigma70_r1_2,Sigma70_r2,Sigma70_ner142 → 142.1 → 142.1.1
51Le4yfkL2L:508-613Sigma70_r4101 → 101.1 → 101.1.1
52Le4yfkL3L:447-507Sigma70_r3101 → 101.1 → 101.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors